Joint EBI-Wellcome Trust Proteomics workshop

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• EBI
• Monday 19 November 2007, 11:00-12:00
• IT-training facilities at theEBI.

If you have a question about this talk, please contact Maria Victoria Schneider.

This joint EMBL -EBI/Wellcome Trust workshop provides an introduction to bioinformatics tools provided by the European Bioinformatics Institute and freely available on the internet. Students will be given hands-on training in the use of public sequence databases for peptide analysis, annotation of subsequent proteins lists using these resources and information from molecular interaction and pathway databases. The use of PRIDE – a public repository of protein and peptide identifications from multiple species, tissues and sub-cellular locations – will be examined, both as a source of additional information and with a view to eventual data deposition. The workshop is aimed at research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff as well as specialists in related fields. Acceptance will be subject to a selection process. Topics include

• Sequence databases and their uses
• Gene Ontology as a data classification tool
• Using ontologies to annotate data
• Standardising proteomics data
• PRIDE – The Proteomics Identification Database
• IntAct Molecular Interaction database
• Reactome – placing proteins in pathways

Trainers (European Bioinformatics Institute)

• Sandra Orchard
• Emily Dimmer
• Richard Côté
• Samuel Kerrien
• Lennart Martens
• Vicky Schneider
• Phil Jones
• David Croft

Guest speaker

• Dr Kathryn Lilley (Cambridge Centre for Proteomics)

This talk is part of the Your personal list series.

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